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<FONT color="green">001</FONT>    package edu.hawaii.myisern.model;<a name="line.1"></a>
<FONT color="green">002</FONT>    <a name="line.2"></a>
<FONT color="green">003</FONT>    import java.util.List;<a name="line.3"></a>
<FONT color="green">004</FONT>    import java.util.ArrayList;<a name="line.4"></a>
<FONT color="green">005</FONT>    import net.sourceforge.stripes.util.Log;<a name="line.5"></a>
<FONT color="green">006</FONT>    import edu.hawaii.myisern.researchers.jaxb.Researcher;<a name="line.6"></a>
<FONT color="green">007</FONT>    import edu.hawaii.myisern.organizations.jaxb.Organization;<a name="line.7"></a>
<FONT color="green">008</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Collaboration;<a name="line.8"></a>
<FONT color="green">009</FONT>    <a name="line.9"></a>
<FONT color="green">010</FONT>    /**<a name="line.10"></a>
<FONT color="green">011</FONT>     * Reports on data incompleteness between Organizations, Researchers, &amp; Collaborations.<a name="line.11"></a>
<FONT color="green">012</FONT>     *<a name="line.12"></a>
<FONT color="green">013</FONT>     * @author Lisa Chen<a name="line.13"></a>
<FONT color="green">014</FONT>     */<a name="line.14"></a>
<FONT color="green">015</FONT>    public class Report {<a name="line.15"></a>
<FONT color="green">016</FONT>    <a name="line.16"></a>
<FONT color="green">017</FONT>      /** Logging debug output. */<a name="line.17"></a>
<FONT color="green">018</FONT>      protected static Log log = Log.getInstance(Report.class);<a name="line.18"></a>
<FONT color="green">019</FONT>    <a name="line.19"></a>
<FONT color="green">020</FONT>      /** Default constructor. */<a name="line.20"></a>
<FONT color="green">021</FONT>      public Report() {<a name="line.21"></a>
<FONT color="green">022</FONT>        // do nothing<a name="line.22"></a>
<FONT color="green">023</FONT>      }<a name="line.23"></a>
<FONT color="green">024</FONT>    <a name="line.24"></a>
<FONT color="green">025</FONT>      /**<a name="line.25"></a>
<FONT color="green">026</FONT>       * Get Researcher without valid Organization Ids.<a name="line.26"></a>
<FONT color="green">027</FONT>       *<a name="line.27"></a>
<FONT color="green">028</FONT>       * @return List of Researchers without an Org or valid Org Ids.<a name="line.28"></a>
<FONT color="green">029</FONT>       */<a name="line.29"></a>
<FONT color="green">030</FONT>      public List&lt;Researcher&gt; getResesarchersWithoutOrgs() {<a name="line.30"></a>
<FONT color="green">031</FONT>        List&lt;Researcher&gt; resWithoutOrgsErrors = new ArrayList&lt;Researcher&gt;();<a name="line.31"></a>
<FONT color="green">032</FONT>        IsernManager im = new IsernManager();<a name="line.32"></a>
<FONT color="green">033</FONT>        for (Researcher res : im.getResearchers()) {<a name="line.33"></a>
<FONT color="green">034</FONT>          if (res.getOrganization() == null) {<a name="line.34"></a>
<FONT color="green">035</FONT>            resWithoutOrgsErrors.add(res);<a name="line.35"></a>
<FONT color="green">036</FONT>            log.debug("Reseacher without Org added1 = " + res.getName()) ;<a name="line.36"></a>
<FONT color="green">037</FONT>            continue;<a name="line.37"></a>
<FONT color="green">038</FONT>          }<a name="line.38"></a>
<FONT color="green">039</FONT>          Id orgId = new Id(res.getOrganization());<a name="line.39"></a>
<FONT color="green">040</FONT>          boolean found = false;<a name="line.40"></a>
<FONT color="green">041</FONT>          for (Organization org : im.getOrganizations()) {<a name="line.41"></a>
<FONT color="green">042</FONT>            if (orgId.equals(new Id(org.getName()))) {<a name="line.42"></a>
<FONT color="green">043</FONT>              found = true;<a name="line.43"></a>
<FONT color="green">044</FONT>              break;<a name="line.44"></a>
<FONT color="green">045</FONT>            }<a name="line.45"></a>
<FONT color="green">046</FONT>          }<a name="line.46"></a>
<FONT color="green">047</FONT>          if (!found) {<a name="line.47"></a>
<FONT color="green">048</FONT>            resWithoutOrgsErrors.add(res);<a name="line.48"></a>
<FONT color="green">049</FONT>            log.debug("Reseacher without Org added2 = " + res.getName()) ;<a name="line.49"></a>
<FONT color="green">050</FONT>          }<a name="line.50"></a>
<FONT color="green">051</FONT>        }<a name="line.51"></a>
<FONT color="green">052</FONT>        return resWithoutOrgsErrors;<a name="line.52"></a>
<FONT color="green">053</FONT>      }<a name="line.53"></a>
<FONT color="green">054</FONT>    <a name="line.54"></a>
<FONT color="green">055</FONT>      /**<a name="line.55"></a>
<FONT color="green">056</FONT>       * Get Organizations without Researchers by IDs.<a name="line.56"></a>
<FONT color="green">057</FONT>       *<a name="line.57"></a>
<FONT color="green">058</FONT>       * @return List of Organizations without affiliated researchers.<a name="line.58"></a>
<FONT color="green">059</FONT>       */<a name="line.59"></a>
<FONT color="green">060</FONT>      public synchronized List&lt;Organization&gt; getOrgsWithoutResesarchers() {<a name="line.60"></a>
<FONT color="green">061</FONT>        List&lt;Organization&gt; orgsWithoutResesarchErrors = new ArrayList&lt;Organization&gt;();<a name="line.61"></a>
<FONT color="green">062</FONT>        IsernManager im = new IsernManager();<a name="line.62"></a>
<FONT color="green">063</FONT>        for (Organization org : im.getOrganizations()) {<a name="line.63"></a>
<FONT color="green">064</FONT>          if (org.getContact() == null) {<a name="line.64"></a>
<FONT color="green">065</FONT>            orgsWithoutResesarchErrors.add(org);<a name="line.65"></a>
<FONT color="green">066</FONT>            log.debug("Org without Researcher added1 = " + org.getName()) ;<a name="line.66"></a>
<FONT color="green">067</FONT>            continue;<a name="line.67"></a>
<FONT color="green">068</FONT>          }<a name="line.68"></a>
<FONT color="green">069</FONT>          Id researcherId = new Id(org.getContact());<a name="line.69"></a>
<FONT color="green">070</FONT>          boolean found = false;<a name="line.70"></a>
<FONT color="green">071</FONT>          for (Researcher res : im.getResearchers()) {<a name="line.71"></a>
<FONT color="green">072</FONT>            if (researcherId.equals(new Id(res.getName()))) {<a name="line.72"></a>
<FONT color="green">073</FONT>              found = true;<a name="line.73"></a>
<FONT color="green">074</FONT>              break;<a name="line.74"></a>
<FONT color="green">075</FONT>            }<a name="line.75"></a>
<FONT color="green">076</FONT>          }<a name="line.76"></a>
<FONT color="green">077</FONT>          if (!found) {<a name="line.77"></a>
<FONT color="green">078</FONT>            orgsWithoutResesarchErrors.add(org);<a name="line.78"></a>
<FONT color="green">079</FONT>            log.debug("Org without Researcher added2 = " + org.getName()) ;<a name="line.79"></a>
<FONT color="green">080</FONT>          }<a name="line.80"></a>
<FONT color="green">081</FONT>        }<a name="line.81"></a>
<FONT color="green">082</FONT>        return orgsWithoutResesarchErrors;<a name="line.82"></a>
<FONT color="green">083</FONT>      }<a name="line.83"></a>
<FONT color="green">084</FONT>    <a name="line.84"></a>
<FONT color="green">085</FONT>      /**<a name="line.85"></a>
<FONT color="green">086</FONT>       * Get Collaborations without valid Organization Ids.<a name="line.86"></a>
<FONT color="green">087</FONT>       *<a name="line.87"></a>
<FONT color="green">088</FONT>       * @return List of Collaborations without an Org or valid Org Ids.<a name="line.88"></a>
<FONT color="green">089</FONT>       */<a name="line.89"></a>
<FONT color="green">090</FONT>      public synchronized List&lt;Collaboration&gt; getCollabsWithoutOrgs() {<a name="line.90"></a>
<FONT color="green">091</FONT>        List&lt;Collaboration&gt; collabsWithoutOrgsErrors = new ArrayList&lt;Collaboration&gt;();<a name="line.91"></a>
<FONT color="green">092</FONT>        IsernManager im = new IsernManager();<a name="line.92"></a>
<FONT color="green">093</FONT>    <a name="line.93"></a>
<FONT color="green">094</FONT>        for (Collaboration collab : im.getCollaborations()) {<a name="line.94"></a>
<FONT color="green">095</FONT>          // if collaboration is missing a name<a name="line.95"></a>
<FONT color="green">096</FONT>          if (collab.getName() == null) {<a name="line.96"></a>
<FONT color="green">097</FONT>            collabsWithoutOrgsErrors.add(collab);<a name="line.97"></a>
<FONT color="green">098</FONT>            log.debug("Collab without Org added1 = " + collab.getName()) ;<a name="line.98"></a>
<FONT color="green">099</FONT>            continue;<a name="line.99"></a>
<FONT color="green">100</FONT>          }<a name="line.100"></a>
<FONT color="green">101</FONT>          // Validate the list of organizations for the current collaboration<a name="line.101"></a>
<FONT color="green">102</FONT>          for (String collabOrg :<a name="line.102"></a>
<FONT color="green">103</FONT>            collab.getCollaboratingOrganizations().getCollaboratingOrganization()) {<a name="line.103"></a>
<FONT color="green">104</FONT>            Id orgId = new Id(collabOrg);<a name="line.104"></a>
<FONT color="green">105</FONT>            boolean found = false;<a name="line.105"></a>
<FONT color="green">106</FONT>            for (Organization org : im.getOrganizations()) {<a name="line.106"></a>
<FONT color="green">107</FONT>              if (orgId.equals(new Id(org.getName()))) {<a name="line.107"></a>
<FONT color="green">108</FONT>                found = true;<a name="line.108"></a>
<FONT color="green">109</FONT>                break;<a name="line.109"></a>
<FONT color="green">110</FONT>              }<a name="line.110"></a>
<FONT color="green">111</FONT>            }<a name="line.111"></a>
<FONT color="green">112</FONT>            // if no valid organization(s) or missing organization(s)<a name="line.112"></a>
<FONT color="green">113</FONT>            if (!found) {<a name="line.113"></a>
<FONT color="green">114</FONT>              collabsWithoutOrgsErrors.add(collab);<a name="line.114"></a>
<FONT color="green">115</FONT>              log.debug("Collab without Org added2 = " + collab.getName()) ;<a name="line.115"></a>
<FONT color="green">116</FONT>            }<a name="line.116"></a>
<FONT color="green">117</FONT>          }<a name="line.117"></a>
<FONT color="green">118</FONT>        }<a name="line.118"></a>
<FONT color="green">119</FONT>        return collabsWithoutOrgsErrors;<a name="line.119"></a>
<FONT color="green">120</FONT>      }<a name="line.120"></a>
<FONT color="green">121</FONT>    <a name="line.121"></a>
<FONT color="green">122</FONT>      /**<a name="line.122"></a>
<FONT color="green">123</FONT>       * Get Collaborations without outcomes.<a name="line.123"></a>
<FONT color="green">124</FONT>       *<a name="line.124"></a>
<FONT color="green">125</FONT>       * @return List of Collaborations without outcomes.<a name="line.125"></a>
<FONT color="green">126</FONT>       */<a name="line.126"></a>
<FONT color="green">127</FONT>      public synchronized List&lt;Collaboration&gt; getCollabsWithoutOutcomes() {<a name="line.127"></a>
<FONT color="green">128</FONT>        List&lt;Collaboration&gt; collabsWithoutOutcomes = new ArrayList&lt;Collaboration&gt;();<a name="line.128"></a>
<FONT color="green">129</FONT>        IsernManager im = new IsernManager();<a name="line.129"></a>
<FONT color="green">130</FONT>    <a name="line.130"></a>
<FONT color="green">131</FONT>        for (Collaboration collab : im.getCollaborations()) {<a name="line.131"></a>
<FONT color="green">132</FONT>          // if collaboration is missing a name<a name="line.132"></a>
<FONT color="green">133</FONT>          if (collab.getName() == null) {<a name="line.133"></a>
<FONT color="green">134</FONT>            collabsWithoutOutcomes.add(collab);<a name="line.134"></a>
<FONT color="green">135</FONT>            log.debug("Collab without Outcome added1 = " + collab.getName()) ;<a name="line.135"></a>
<FONT color="green">136</FONT>            continue;<a name="line.136"></a>
<FONT color="green">137</FONT>          }<a name="line.137"></a>
<FONT color="green">138</FONT>          // if outcome is missing, add it to the list<a name="line.138"></a>
<FONT color="green">139</FONT>          if (collab.getOutcomeTypes().getOutcomeType() == null) {<a name="line.139"></a>
<FONT color="green">140</FONT>            collabsWithoutOutcomes.add(collab);<a name="line.140"></a>
<FONT color="green">141</FONT>            log.debug("Collab without Outcome added2 = " + collab.getName()) ;<a name="line.141"></a>
<FONT color="green">142</FONT>            continue;<a name="line.142"></a>
<FONT color="green">143</FONT>          }<a name="line.143"></a>
<FONT color="green">144</FONT>        }<a name="line.144"></a>
<FONT color="green">145</FONT>        return collabsWithoutOutcomes;<a name="line.145"></a>
<FONT color="green">146</FONT>      }<a name="line.146"></a>
<FONT color="green">147</FONT>    }<a name="line.147"></a>




























































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